Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
Kdm1a

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

source_name
Embryonic stem cells
cell line
mESC CCE
strain
129/Sv
antibody
LSD1, Cell Signaling Tech #2184, clone C69G12
genotype
WT

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
ChIP was performed with SimpleChIP Plus Enzymatic Chromatin IP Kit (Cell Signaling Tech. #9005) following the standard protocol. About 4 million cells were used for each ChIP experiment, with two antibodies of LSD1 (Cell Signaling Tech. #2184, clone C69G12; and Abcam, ab17721). Massively parallel sequencing was performed with the Illumina HiSeq4000 according to the manufacturer's protocol, and paired-end 150 bp-length reads were produced.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
24350400
Reads aligned (%)
95.7
Duplicates removed (%)
18.2
Number of peaks
1599 (qval < 1E-05)

mm9

Number of total reads
24350400
Reads aligned (%)
95.5
Duplicates removed (%)
18.2
Number of peaks
1542 (qval < 1E-05)

Base call quality data from DBCLS SRA