Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H1t

Cell type

Cell type Class
Gonad
Cell type
Spermatocytes
MeSH Description
Male germ cells derived from SPERMATOGONIA. The euploid primary spermatocytes undergo MEIOSIS and give rise to the haploid secondary spermatocytes which in turn give rise to SPERMATIDS.

Attributes by original data submitter

Sample

source_name
Testicular cells
strain
C57BL6
cell type
Pachytene cells
age
post natal day 20
chip antibody
anti-H1t

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

mm10

Number of total reads
28430119
Reads aligned (%)
92.8
Duplicates removed (%)
21.9
Number of peaks
177 (qval < 1E-05)

mm9

Number of total reads
28430119
Reads aligned (%)
92.7
Duplicates removed (%)
21.9
Number of peaks
141 (qval < 1E-05)

Base call quality data from DBCLS SRA