SRX737177
GSM1528825: eye-antennal-imaginal-disc input; Drosophila melanogaster; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Larvae
Cell type
Eye-antennal discs
NA
NA

Attributes by original data submitter

Sample

source_name
eye-antennal discs
tissue
eye-antennal discs
developmental stage
third instar larvae
sample extraction method
Hand dissection
genotype
CantonS
antibody
none (input)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated chromatin from eye antennal discs and Grh-GFP-DNA complexes were isolated with a GFP antibody. Libraries were prepared according to Illumina's instructions accompanying the Trueseq DNA library prep.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

dm6

Number of total reads
23025275
Reads aligned (%)
90.7
Duplicates removed (%)
18.2
Number of peaks
12069 (qval < 1E-05)

dm3

Number of total reads
23025275
Reads aligned (%)
91.0
Duplicates removed (%)
17.1
Number of peaks
11081 (qval < 1E-05)

Base call quality data from DBCLS SRA