Curated Sample Data


Genome
dm3
Antigen Class
Input control
Antigen
Input control
Cell type Class
Larvae
Cell type
Eye-antennal discs

Cell type information


NA
NA

Attributes by Original Data Submitter


source_name
eye-antennal discs
tissue
eye-antennal discs
developmental stage
third instar larvae
sample extraction method
Hand dissection
genotype
CantonS
antibody
none (input)

Metadata from Sequence Read Archive

Library Description


library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated chromatin from eye antennal discs and Grh-GFP-DNA complexes were isolated with a GFP antibody. Libraries were prepared according to Illumina's instructions accompanying the Trueseq DNA library prep.

Platform Information


instrument_model
Illumina HiSeq 2000

External Database Query

Logs in read processing pipeline


Number of total reads
23025275
Reads aligned (%)
91.0
Duplicates removed (%)
17.1
Number of peaks
11059 (qval < 1E-05)

Sequence Quality Data from DBCLS SRA