Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
MITF

Cell type

Cell type Class
Epidermis
Cell type
Hermes 3C
NA
NA

Attributes by original data submitter

Sample

source_name
Hermes4c - lentiviral transduction of a HA-tagged MITF-M construct (pLX3xHAvar4mCherry)
cell line
Hermes4c
antibody
anti-HA-tag (12CA5, Roche)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
46359949
Reads aligned (%)
82.9
Duplicates removed (%)
12.2
Number of peaks
107621 (qval < 1E-05)

hg38

Number of total reads
46359949
Reads aligned (%)
84.1
Duplicates removed (%)
11.4
Number of peaks
107904 (qval < 1E-05)

Base call quality data from DBCLS SRA