Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Others
Cell type
Otic progenitor cells
NA
NA

Attributes by original data submitter

Sample

source_name
iMOP cells
cell type
immortalized multipotent otic progenitor
chip antibody
none

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
iMOP cells were harvested by gravity sedimentation. Cells were lysed and nuclei enriched. Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody. ChIP-Seq libraries were prepared for sequencing using standard Illumina protocols

Sequencing Platform

instrument_model
Illumina Genome Analyzer II

mm10

Number of total reads
58332155
Reads aligned (%)
49.6
Duplicates removed (%)
6.6
Number of peaks
11211 (qval < 1E-05)

mm9

Number of total reads
58332155
Reads aligned (%)
49.6
Duplicates removed (%)
6.7
Number of peaks
10702 (qval < 1E-05)

Base call quality data from DBCLS SRA