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For hg19
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For hg38
BigWig
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Peak-call (q < 1E-10)
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For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: YY1
wikigenes
PDBj
CellType: PLC/PRF/5
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX7359959
GSM4217249: YY1-ChIP Met; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
YY1
Cell type
Cell type Class
Liver
Cell type
PLC/PRF/5
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular
Attributes by original data submitter
Sample
source_name
YY1-ChIP Met
cell line
PLC-PRF-5
treatment
600μM metformin for 48h
chip antibody
YY1 (Abcam, ab109237)
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and Twist1-DNA or YY1-DNA complexes were isolated with antibody. Libraries were prepared according to Illumina's instructions accompanying the DNA Sample Kit.
Sequencing Platform
instrument_model
Illumina Genome Analyzer
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
23188365
Reads aligned (%)
70.4
Duplicates removed (%)
10.2
Number of peaks
138 (qval < 1E-05)
hg38
Number of total reads
23188365
Reads aligned (%)
71.0
Duplicates removed (%)
10.1
Number of peaks
224 (qval < 1E-05)
Base call quality data from
DBCLS SRA