Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
TWIST1

Cell type

Cell type Class
Liver
Cell type
PLC/PRF/5
Primary Tissue
Liver
Tissue Diagnosis
Carcinoma Hepatocellular

Attributes by original data submitter

Sample

source_name
Twist1-ChIP Control
cell line
PLC-PRF-5
chip antibody
Twist1 (Abcam, ab50887)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg19

Number of total reads
31792480
Reads aligned (%)
65.5
Duplicates removed (%)
13.7
Number of peaks
240 (qval < 1E-05)

hg38

Number of total reads
31792480
Reads aligned (%)
66.2
Duplicates removed (%)
13.5
Number of peaks
460 (qval < 1E-05)

Base call quality data from DBCLS SRA