SRX7352072
ATAC-Seq of mus musculus:adult male CD138

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
CD138+ cells
NA
NA

Attributes by original data submitter

Sample

strain
C57BL/6
age
12 Week
sex
male
tissue
Colon
cell_type
CD34-CD138+
genotype
WT
sample_type
ATAC
treatment
H2O
replicate
biological replicate 1

Sequenced DNA Library

library_name
ATBS04
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
10606986
Reads aligned (%)
39.1
Duplicates removed (%)
17.5
Number of peaks
99 (qval < 1E-05)

mm9

Number of total reads
10606986
Reads aligned (%)
39.1
Duplicates removed (%)
17.5
Number of peaks
79 (qval < 1E-05)

Base call quality data from DBCLS SRA