Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27ac

Cell type

Cell type Class
Breast
Cell type
ZR-75-1
Primary Tissue
Breast
Tissue Diagnosis
Adenocarcinoma Ductal

Attributes by original data submitter

Sample

source_name
breast cancer cells
cell line
ZR75-1
treatment
Control shRNA (scramble) for ZR75-1 cells with DOX-inducible expression of JUN-with DOX treatment
growth medium
Full media
chip antibody
H3K27ac(Abcam, ab4729)

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
17238248
Reads aligned (%)
96.3
Duplicates removed (%)
13.5
Number of peaks
27447 (qval < 1E-05)

hg19

Number of total reads
17238248
Reads aligned (%)
96.0
Duplicates removed (%)
13.8
Number of peaks
27411 (qval < 1E-05)

Base call quality data from DBCLS SRA