Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Lung
Cell type
IMR-90
Primary Tissue
Lung
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
IMR90 cells
chip_antibody
Rabbit polyclonal anti-CAP-H2 (Bethyl Laboratories, A302-275A, lot #A2)
relevant information for chip_antibody
Validated by RNAi & western blot
genptype/ variation
wild type/ OIS
passage
28-36
cell type
Lung fibroblasts
karyotype
Normal diploid

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
31908091
Reads aligned (%)
94.1
Duplicates removed (%)
11.1
Number of peaks
1050 (qval < 1E-05)

hg19

Number of total reads
31908091
Reads aligned (%)
93.4
Duplicates removed (%)
12.9
Number of peaks
945 (qval < 1E-05)

Base call quality data from DBCLS SRA