Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Adipocyte
Cell type
Adipose Tissue
MeSH Description
Encapsulated adipose tissue.

Attributes by original data submitter

Sample

source_name
inguinal adipose tissue
strain
C57BL/6
tissue
whole inguinal adipose tissue
phenotype
flox/flox

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Nuclei from frozen mouse inguinal fat were isolated by gradient centrifugation. 50000 isolated nuclei were used in each transposase reaction (Illumina). The sequencing libraries were barcoded and amplified by 2-step PCR. DNA sequencing were performed on Illumina NextSeq-500 instrument with 38-bp paired-end reads.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

mm10

Number of total reads
62409410
Reads aligned (%)
35.7
Duplicates removed (%)
13.1
Number of peaks
7868 (qval < 1E-05)

mm9

Number of total reads
62409410
Reads aligned (%)
35.6
Duplicates removed (%)
13.1
Number of peaks
7848 (qval < 1E-05)

Base call quality data from DBCLS SRA