SRX7230081
ATAC seq of mus musculus: OKS shLuc D7

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Embryo
Cell type
E13.5 embryos
NA
NA

Attributes by original data submitter

Sample

strain
129/OG2
isolate
52
dev_stage
E13.5
sex
pooled male and female
tissue
embryo

Sequenced DNA Library

library_name
OKS_shLuc_D7_ATAC
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
17228070
Reads aligned (%)
90.5
Duplicates removed (%)
13.6
Number of peaks
34369 (qval < 1E-05)

mm9

Number of total reads
17228070
Reads aligned (%)
90.4
Duplicates removed (%)
13.6
Number of peaks
34405 (qval < 1E-05)

Base call quality data from DBCLS SRA