GSM4194785: ATAC-seq CHD8-Control CR3; Homo sapiens; ATAC-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Pluripotent stem cell
Cell type
iPSC derived neural cells
NA
NA
Attributes by original data submitter
Sample
source_name
Neurons
cell type
iPSC-derived neuron
differentiation time
3 weeks
genotype/variation
Control (CHD8+/-)
sample type
Bulk
Sequenced DNA Library
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Extract protocol for ChIP-seq, RNA-seq and ATAC-seq are according to "method" section in the manuscript. RNA and ChIP libraries were prepared for sequencing using standard Illumina protocols. ATAC : we followed the cited protocol in the method section: Chen, X. et al. Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity. Nature communications 9, 4590, doi:10.1038/s41467-018-07115-y (2018).