Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me3

Cell type

Cell type Class
Blood
Cell type
RAMOS
Primary Tissue
Blood
Tissue Diagnosis
Malignant Lymphoma - Burkitts Type

Attributes by original data submitter

Sample

source_name
RAMOS
genotype/variation
AICDA-/-
tissue
Burkitt's lymphoma cell line
chip antibody
Anti-trimethyl-Histone H3 (Lys4)
chip antibody vendor
Millipore

Sequenced DNA Library

library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests

Sequencing Platform

instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests

hg38

Number of total reads
22766399
Reads aligned (%)
98.6
Duplicates removed (%)
43.9
Number of peaks
40330 (qval < 1E-05)

hg19

Number of total reads
22766399
Reads aligned (%)
98.5
Duplicates removed (%)
44.0
Number of peaks
40207 (qval < 1E-05)

Base call quality data from DBCLS SRA