SRX722007
GSM1519056: KARPAS422 Input; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Blood
Cell type
KARPAS-422
Primary Tissue
Blood
Tissue Diagnosis
Lymphoma Non-Hodgkins

Attributes by original data submitter

Sample

source_name
Diffuse large B cell lymphoma
cell line
KARPAS-422
chip antibody
None

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
genomic DNA Sample processing, library generation and deep sequencing were carried out using the services of Active Motif.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
33638450
Reads aligned (%)
99.0
Duplicates removed (%)
4.9
Number of peaks
1247 (qval < 1E-05)

hg19

Number of total reads
33638450
Reads aligned (%)
98.3
Duplicates removed (%)
6.1
Number of peaks
1266 (qval < 1E-05)

Base call quality data from DBCLS SRA