SRX7217778
GSM4193041: HDA-1 input (L4440) rep1; Caenorhabditis elegans; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Input control
Antigen
Input control

Cell type

Cell type Class
Adult
Cell type
Adult body
NA
NA

Attributes by original data submitter

Sample

source_name
the whole organism
strain
hda-1p::hda-1::gfp; glp-4(bn2)
developmental stage
Day1 of adulthood
chip antibody
none
knockdown
L4440 RNAi

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Worms were cross-linked by formaldehyde and homogenized by a glass homogenizer.Lysates were clarified from sonicated nuclei and protein-DNA complexes were isolated with antibody. Libraries were prepared by DNA Sample Kit (NEB, E7370).

Sequencing Platform

instrument_model
HiSeq X Ten

Where can I get the processing logs?

Read processing pipeline log

ce11

Number of total reads
7928426
Reads aligned (%)
86.3
Duplicates removed (%)
14.2
Number of peaks
306 (qval < 1E-05)

ce10

Number of total reads
7928426
Reads aligned (%)
86.3
Duplicates removed (%)
14.2
Number of peaks
307 (qval < 1E-05)

Base call quality data from DBCLS SRA