SRX7214612
H3K9ACWT

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

strain
WT
isolate
H3K9ACWT
breed
MEFs
cultivar
Mus musculus
ecotype
Macau
age
1
dev_stage
6mo
sex
male
tissue
MEFs

Sequenced DNA Library

library_name
H3K9ACWT
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
45686592
Reads aligned (%)
98.0
Duplicates removed (%)
14.3
Number of peaks
24913 (qval < 1E-05)

mm9

Number of total reads
45686592
Reads aligned (%)
97.9
Duplicates removed (%)
14.3
Number of peaks
24962 (qval < 1E-05)

Base call quality data from DBCLS SRA