Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Larvae
Cell type
Imaginal wing disc
NA
NA

Attributes by original data submitter

Sample

source_name
L3 wing imaginal disc
age
early L3
damage status
damaged

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Discs were dissected in PBS immediately upon downshift and collected as pools of 100 discs for early L3 samples and 50 discs for late L3 samples. The 4 samples were placed in lysis buffer (10mM Tris 7.5, 10mM NaCl, 3mM MgCl2, 0.1% IGEPAL CA-630), and pelleted for library prep. Each of the 4 samples was repeated in triplicate from separate repeats of larval ablation. ATAC-seq libraries were created using Illumina Tn5 transposase, essentially as in Buenrostro et al. 2013.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

dm6

Number of total reads
30155351
Reads aligned (%)
80.1
Duplicates removed (%)
53.0
Number of peaks
12740 (qval < 1E-05)

dm3

Number of total reads
30155351
Reads aligned (%)
80.2
Duplicates removed (%)
51.8
Number of peaks
13446 (qval < 1E-05)

Base call quality data from DBCLS SRA