SRX717849
GSM1517085: DNaseI DMSO; Homo sapiens; DNase-Hypersensitivity

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Uterus
Cell type
HeLa
Primary Tissue
Cervix
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HeLa B2 cells
cell line
HeLa
treatment protocol
none
chip antibody
none

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
Libraries were prepared according to Illumina's instructions.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30147927
Reads aligned (%)
93.8
Duplicates removed (%)
50.5
Number of peaks
1849 (qval < 1E-05)

hg19

Number of total reads
30147927
Reads aligned (%)
93.5
Duplicates removed (%)
51.4
Number of peaks
1036 (qval < 1E-05)

Base call quality data from DBCLS SRA