Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Uterus
Cell type
HEC-1-A
Primary Tissue
Uterus
Site of Extraction
Endometrium
Tissue Diagnosis
Adenocarcinoma

Attributes by original data submitter

Sample

source_name
HEC-1-A
genotype
METTL3 Control
chip-seq
rabbit anti-H3K27ac (ab4729, Abcam)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Chromatin immunoprecipitation was performed using Auto iDeal ChIP-seq kit for Histone (diagenode) with spike-in Chromatin (Active Motif) and spike-in Antibody (Active Motif) following the manufacturer's protocols. Library preparation was performed by using KAPA HyperPlus Kits (Kapabiosystems) according to the manufacturer's protocols.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
46441480
Reads aligned (%)
96.7
Duplicates removed (%)
5.5
Number of peaks
35957 (qval < 1E-05)

hg19

Number of total reads
46441480
Reads aligned (%)
96.3
Duplicates removed (%)
5.8
Number of peaks
35818 (qval < 1E-05)

Base call quality data from DBCLS SRA