Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Hematopoietic progenitors
NA
NA

Attributes by original data submitter

Sample

source_name
Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors
tissue
Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors
weeks after recombination
4
sorting strategy
Lin-;Sca1+;c-Kit+
genotype/variation
Mx1-Cre Tet2 fl/fl

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Bone marrow (BM) cells were isolated into cold phosphate-buffered saline (PBS), without Ca2+ and Mg2+, and supplemented with 2% bovine serum albumin (BSA) to generate single cell suspensions. Red blood cells (RBCs) were removed using ammonium chloride-potassium bicarbonate (ACK) lysis buffer, resuspended in PBS/2% BSA, and filtered through a 40μm cell strainer. Cells were sorted and inmediately underwent the indicated protocol.

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
131790994
Reads aligned (%)
97.5
Duplicates removed (%)
5.7
Number of peaks
1 (qval < 1E-05)

mm9

Number of total reads
131790994
Reads aligned (%)
97.4
Duplicates removed (%)
5.8
Number of peaks
0 (qval < 1E-05)

Base call quality data from DBCLS SRA