Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
HDAC1

Cell type

Cell type Class
Blood
Cell type
K-562
Primary Tissue
Blood
Tissue Diagnosis
Leukemia Chronic Myelogenous

Attributes by original data submitter

Sample

source_name
K562
cell
K562
antibodies
HDAC1
antibody lot number
Active Motif 40967
dilution
rabbit pAb 6:100

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
https://elifesciences.org/articles/21856 Low-input single-stranded library construction protocol as per PMIDs 23493070 & 26771485

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg19

Number of total reads
18052808
Reads aligned (%)
167.3
Duplicates removed (%)
12.0
Number of peaks
15693 (qval < 1E-05)

hg38

Number of total reads
18052808
Reads aligned (%)
169.5
Duplicates removed (%)
11.5
Number of peaks
15816 (qval < 1E-05)

Base call quality data from DBCLS SRA