Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Blood

Cell type

Thymocytes

MeSH Description

HEMATOPOIETIC PROGENITOR CELLS that have migrated to the THYMUS where they differentiate into T-LYMPHOCYTES. Thymocytes are classified into maturational stages based on the expression of CELL SURFACE ANTIGENS.

Sample

isolate

09-Sep-2019

dev_stage

6 weeks

sex

male

tissue

thymocytes

collection_date

2019-09-09

genotype

CKO

sample_type

Primary cell

treatment

ATAC-seq-CKO2

replicate

biological replicate 2

Sequenced DNA Library

library_name

ATACSEQ_CKO_2

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

Sequencing Platform

instrument_model

HiSeq X Ten

mm10

Number of total reads

25196592

Reads aligned (%)

97.0

Duplicates removed (%)

9.5

Number of peaks

18082 (qval < 1E-05)

mm9

Number of total reads

25196592

Reads aligned (%)

96.9

Duplicates removed (%)

9.5

Number of peaks

17729 (qval < 1E-05)