SRX7089342
GSM4146557: TF ChIP-seq from suprapubic skin (ENCLB609RFP); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Epidermis
Cell type
Suprapubic skin
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
suprapubic skin
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
30359204
Reads aligned (%)
94.8
Duplicates removed (%)
5.6
Number of peaks
26227 (qval < 1E-05)

hg19

Number of total reads
30359204
Reads aligned (%)
93.8
Duplicates removed (%)
6.8
Number of peaks
26228 (qval < 1E-05)

Base call quality data from DBCLS SRA