SRX7089301
GSM4146516: Histone ChIP-seq from suprapubic skin (ENCLB727WIS); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Epidermis
Cell type
Suprapubic skin
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
suprapubic skin
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
41057786
Reads aligned (%)
97.8
Duplicates removed (%)
3.0
Number of peaks
829 (qval < 1E-05)

hg19

Number of total reads
41057786
Reads aligned (%)
97.1
Duplicates removed (%)
3.9
Number of peaks
952 (qval < 1E-05)

Base call quality data from DBCLS SRA