SRX7089299
GSM4146514: ATAC-seq from breast epithelium (ENCLB095HXE); Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Breast
Cell type
Breast epithelium
NA
NA

Attributes by original data submitter

Sample

sex
female
tissue
breast epithelium
lab
Michael Snyder, Stanford
sample_type
tissue
age
51 year
donor ID
ENCDO271OUW
dev_stage
adult

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/404ab3a6-4766-45ca-af80-878a344f07b6/@@download/attachment/ATAC-Seq%20protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
83916062
Reads aligned (%)
67.7
Duplicates removed (%)
15.3
Number of peaks
23693 (qval < 1E-05)

hg19

Number of total reads
83916062
Reads aligned (%)
67.1
Duplicates removed (%)
15.8
Number of peaks
22952 (qval < 1E-05)

Base call quality data from DBCLS SRA