Sample information curated by ChIP-Atlas

Antigen

Antigen Class
DNase-seq
Antigen
DNase-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
Tibial Arteries
MeSH Description
The anterior and posterior arteries created at the bifurcation of the popliteal artery. The anterior tibial artery begins at the lower border of the popliteus muscle and lies along the tibia at the distal part of the leg to surface superficially anterior to the ankle joint. Its branches are distributed throughout the leg, ankle, and foot. The posterior tibial artery begins at the lower border of the popliteus muscle, lies behind the tibia in the lower part of its course, and is found situated between the medial malleolus and the medial process of the calcaneal tuberosity. Its branches are distributed throughout the leg and foot.

Attributes by original data submitter

Sample

sample_type
tissue
tissue
tibial artery
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
John Stamatoyannopoulos, UW
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
DNase-Hypersensitivity
library_source
GENOMIC
library_selection
DNase
library_construction_protocol
other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

hg38

Number of total reads
189265998
Reads aligned (%)
98.9
Duplicates removed (%)
47.7
Number of peaks
36128 (qval < 1E-05)

hg19

Number of total reads
189265998
Reads aligned (%)
98.4
Duplicates removed (%)
48.3
Number of peaks
35885 (qval < 1E-05)

Base call quality data from DBCLS SRA