SRX7089233
GSM4146448: Histone ChIP-seq from sigmoid colon (ENCLB748FQU); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K27me3

Cell type

Cell type Class
Digestive tract
Cell type
Colon, Sigmoid
MeSH Description
A segment of the COLON between the RECTUM and the descending colon.

Attributes by original data submitter

Sample

sample_type
tissue
tissue
sigmoid colon
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
67846472
Reads aligned (%)
98.1
Duplicates removed (%)
20.9
Number of peaks
1583 (qval < 1E-05)

hg19

Number of total reads
67846472
Reads aligned (%)
97.0
Duplicates removed (%)
22.2
Number of peaks
1326 (qval < 1E-05)

Base call quality data from DBCLS SRA