ChIP-Atlas: SRX7089228

Sample information curated by ChIP-Atlas

Antigen

Antigen Class: TFs and others
Antigen: CTCF

Cell type

Cell type Class: Cardiovascular
Cell type: Right atrium auricular region
NA: NA

Attributes by original data submitter

Sample

sample_type: tissue
tissue: right atrium auricular region
sex: female
dev_stage: adult
age: 51 year
donor ID: ENCDO271OUW
lab: Bradley Bernstein, Broad
source: Kristin Ardlie

Sequenced DNA Library

library_strategy: ChIP-Seq
library_source: GENOMIC
library_selection: ChIP
library_construction_protocol: general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model: Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads: 18063574
Reads aligned (%): 89.0
Duplicates removed (%): 2.5
Number of peaks: 6046 (qval < 1E-05)

hg19

Number of total reads: 18063574
Reads aligned (%): 88.0
Duplicates removed (%): 3.7
Number of peaks: 5956 (qval < 1E-05)

Base call quality data from DBCLS SRA