Antigen

Antigen Class

DNase-seq

Antigen

DNase-Seq

Cell type

Cell type Class

Lung

Cell type

Lung

MeSH Description

Either of the pair of organs occupying the cavity of the thorax that effect the aeration of the blood.

Sample

sample_type

tissue

tissue

upper lobe of left lung

sex

male

dev_stage

adult

age

37 year

donor ID

ENCDO845WKR

lab

John Stamatoyannopoulos, UW

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

DNase-Hypersensitivity

library_source

GENOMIC

library_selection

DNase

library_construction_protocol

other: https://www.encodeproject.org/documents/926174f5-d14c-4e77-bc52-5517b56daac0/@@download/attachment/Culturedcells_SOP_nuclei_DNase_crosslink_RNA_V1.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

153804959

Reads aligned (%)

97.0

Duplicates removed (%)

49.6

Number of peaks

26196 (qval < 1E-05)

hg19

Number of total reads

153804959

Reads aligned (%)

96.4

Duplicates removed (%)

50.2

Number of peaks

23014 (qval < 1E-05)