SRX7089204
GSM4146419: Histone ChIP-seq from prostate gland (ENCLB228ZZQ); Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Histone
Antigen
H3K4me1

Cell type

Cell type Class
Prostate
Cell type
Prostate gland
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
prostate gland
sex
male
dev_stage
adult
age
37 year
donor ID
ENCDO845WKR
lab
Bradley Bernstein, Broad
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
not provided

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
22133141
Reads aligned (%)
98.1
Duplicates removed (%)
2.9
Number of peaks
711 (qval < 1E-05)

hg19

Number of total reads
22133141
Reads aligned (%)
97.0
Duplicates removed (%)
3.7
Number of peaks
761 (qval < 1E-05)

Base call quality data from DBCLS SRA