Antigen

Antigen Class

Histone

Antigen

H3K4me1

Cell type

Cell type Class

Prostate

Cell type

Prostate gland

NA

NA

Sample

sample_type

tissue

tissue

prostate gland

sex

male

dev_stage

adult

age

37 year

donor ID

ENCDO845WKR

lab

Bradley Bernstein, Broad

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/f35827f6-da4a-42a6-b4bd-9e1b8b6c1663/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v2.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

49302001

Reads aligned (%)

98.0

Duplicates removed (%)

3.2

Number of peaks

1274 (qval < 1E-05)

hg19

Number of total reads

49302001

Reads aligned (%)

97.0

Duplicates removed (%)

4.3

Number of peaks

1174 (qval < 1E-05)