Antigen

Antigen Class

Histone

Antigen

H3K9me3

Cell type

Cell type Class

Digestive tract

Cell type

Esophagus squamous epithelium

NA

NA

Sample

sample_type

tissue

tissue

esophagus squamous epithelium

sex

male

dev_stage

adult

age

37 year

donor ID

ENCDO845WKR

lab

Bradley Bernstein, Broad

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

43329092

Reads aligned (%)

94.8

Duplicates removed (%)

9.3

Number of peaks

2646 (qval < 1E-05)

hg19

Number of total reads

43329092

Reads aligned (%)

92.2

Duplicates removed (%)

12.8

Number of peaks

1876 (qval < 1E-05)