Antigen

Antigen Class

Input control

Antigen

Input control

Cell type

Cell type Class

Digestive tract

Cell type

Colon, Sigmoid

MeSH Description

A segment of the COLON between the RECTUM and the descending colon.

Sample

sample_type

tissue

tissue

sigmoid colon

sex

male

dev_stage

adult

age

37 year

donor ID

ENCDO845WKR

lab

Bradley Bernstein, Broad

source

Kristin Ardlie

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

general protocol: https://www.encodeproject.org/documents/0bc735f0-1418-456c-a910-77992b868036/@@download/attachment/Bravo_ChIP_v2.0.pdf

Sequencing Platform

instrument_model

Illumina HiSeq 2500

hg38

Number of total reads

53739513

Reads aligned (%)

97.8

Duplicates removed (%)

4.3

Number of peaks

1414 (qval < 1E-05)

hg19

Number of total reads

53739513

Reads aligned (%)

96.8

Duplicates removed (%)

5.6

Number of peaks

1223 (qval < 1E-05)