SRX7089141
GSM4146346: ATAC-seq from right atrium auricular region (ENCLB165YSS); Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Cardiovascular
Cell type
Right atrium auricular region
NA
NA

Attributes by original data submitter

Sample

sample_type
tissue
tissue
right atrium auricular region
sex
female
dev_stage
adult
age
51 year
donor ID
ENCDO271OUW
lab
Michael Snyder, Stanford
source
Kristin Ardlie

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/404ab3a6-4766-45ca-af80-878a344f07b6/@@download/attachment/ATAC-Seq%20protocol.pdf

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
50758630
Reads aligned (%)
47.1
Duplicates removed (%)
14.5
Number of peaks
1878 (qval < 1E-05)

hg19

Number of total reads
50758630
Reads aligned (%)
46.6
Duplicates removed (%)
14.7
Number of peaks
1580 (qval < 1E-05)

Base call quality data from DBCLS SRA