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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: ATAC-Seq
wikigenes
PDBj
CellType: CT26
ATCC
MeSH
RIKEN BRC
SRX7064318
GSM4142060: Tumor derived from resistant CT26 clone-B64 B (ATAC-seq); Mus musculus; ATAC-seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
ATAC-Seq
Antigen
ATAC-Seq
Cell type
Cell type Class
Digestive tract
Cell type
CT26
NA
NA
Attributes by original data submitter
Sample
source_name
CT26 tumor
cell line
CT26
strain
BALB/c
treatment_timing
post
tissue
tumor derived from antiPD1-resistant clone B64 of CT26
Sequenced DNA Library
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Extraction was performed accoring to the standard omni-ATAC protocol Libraries were prepared according to Nextera DNA Flex Library Prep Kit
Sequencing Platform
instrument_model
Illumina HiSeq 2000
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
98738544
Reads aligned (%)
94.8
Duplicates removed (%)
71.7
Number of peaks
77431 (qval < 1E-05)
mm9
Number of total reads
98738544
Reads aligned (%)
94.8
Duplicates removed (%)
71.7
Number of peaks
77422 (qval < 1E-05)
Base call quality data from
DBCLS SRA