SRX7064314
GSM4142056: Tumor derived from parental line CT26 B (ATAC-seq); Mus musculus; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
CT26
NA
NA

Attributes by original data submitter

Sample

source_name
CT26 tumor
cell line
CT26
strain
BALB/c
treatment_timing
post
tissue
tumor derived from parental CT26

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
Extraction was performed accoring to the standard omni-ATAC protocol Libraries were prepared according to Nextera DNA Flex Library Prep Kit

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
57086142
Reads aligned (%)
94.3
Duplicates removed (%)
55.8
Number of peaks
55824 (qval < 1E-05)

mm9

Number of total reads
57086142
Reads aligned (%)
94.2
Duplicates removed (%)
55.9
Number of peaks
55838 (qval < 1E-05)

Base call quality data from DBCLS SRA