Sample information curated by ChIP-Atlas

Antigen

Antigen Class
Unclassified
Antigen
Unclassified

Cell type

Cell type Class
Kidney
Cell type
293
Primary Tissue
Kidney
Tissue Diagnosis
Normal

Attributes by original data submitter

Sample

source_name
HEK293 cells
ip method or chip antibody
Pol II(8WG16):BioLegend No. 664911
genotype
Wild type
treatment
Treated with 1.5% (v/v) 1,6-hexanediol (Sigma, 240117) for 0min

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
5 million cells were used for all ChIP reactions. Crosslinked cells were resuspend in ice-cold lysis buffer (50 mM HEPES, pH=7.9, 5 mM MgCl2, 0.2% Triton X-100, 20% glycerol, 300 mM NaCl) and incubated on ice for 10 min before centrifuged at 500 g for 5 m

Sequencing Platform

instrument_model
Illumina NovaSeq 6000

hg38

Number of total reads
22489814
Reads aligned (%)
94.6
Duplicates removed (%)
10.3
Number of peaks
678 (qval < 1E-05)

hg19

Number of total reads
22489814
Reads aligned (%)
93.9
Duplicates removed (%)
11.2
Number of peaks
575 (qval < 1E-05)

Base call quality data from DBCLS SRA