Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Blood

Cell type

Bone Marrow Cells

MeSH Description

Cells contained in the bone marrow including fat cells (see ADIPOCYTES); STROMAL CELLS; MEGAKARYOCYTES; and the immediate precursors of most blood cells.

Sample

source_name

MPAL Donor Peripheral Blood

disease state

mixed-phenotype acute leukemia (MPAL)

tissue

Peripheral Blood

Sex

male

age

72

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

Nuclei were extracted from cells that were cryopreserved (fresh frozen in either Bambanker freezing media or 10% DMSO with 90% serum). Thawed cells were not filtered for viability prior to loading into droplets. 10X Genomics Single Cell ATAC Kit version 2

Sequencing Platform

instrument_model

NextSeq 550

hg38

Number of total reads

170341049

Reads aligned (%)

98.9

Duplicates removed (%)

52.8

Number of peaks

37832 (qval < 1E-05)

hg19

Number of total reads

170341049

Reads aligned (%)

98.9

Duplicates removed (%)

53.0

Number of peaks

37678 (qval < 1E-05)