Sample information curated by ChIP-Atlas

Antigen

Antigen Class
RNA polymerase
Antigen
RNA polymerase II

Cell type

Cell type Class
Blood
Cell type
B cells
NA
NA

Attributes by original data submitter

Sample

source_name
in vitro activated B cells
strain
C57BL/6
cell type
Splenocyte (B lymphocytes)
genotype
wild type CreERT2
chip antibody
serine 5-phosphorylated RNA Polymerase II (Abcam)

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
RNA was prepared using Illumina's protocol. ChIP-Seq was performed as described. In brief, cells were fixed with 1% paraformaldehyde at 37°C for 10 minutes followed by sonication. Chromatin fragments were then immunoprecipitated with antibodies specific for serine 5-phosphorylated RNA Polymerase II (Abcam). Libraries were prepared according to Illumina's instructions

Sequencing Platform

instrument_model
Illumina HiSeq 2000

mm10

Number of total reads
34708878
Reads aligned (%)
69.9
Duplicates removed (%)
10.3
Number of peaks
16563 (qval < 1E-05)

mm9

Number of total reads
34708878
Reads aligned (%)
69.8
Duplicates removed (%)
10.4
Number of peaks
16538 (qval < 1E-05)

Base call quality data from DBCLS SRA