SRX7036324
GSM4134962: ARID1A ChIPSeq; Homo sapiens; ChIP-Seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
ARID1A

Cell type

Cell type Class
Pluripotent stem cell
Cell type
hESC H9
NA
NA

Attributes by original data submitter

Sample

source_name
hESCs H9 cells
cell type
hESCs H9 cells
antibody
04-080 Sigma-Aldrich, Anti-BAF250a/ARID1a Antibody, clone PSG3

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
Lysates were clarified from sonicated nuclei and histone-DNA complexes were isolated with antibody.

Sequencing Platform

instrument_model
NextSeq 500

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
12968585
Reads aligned (%)
85.1
Duplicates removed (%)
7.0
Number of peaks
15085 (qval < 1E-05)

hg19

Number of total reads
12968585
Reads aligned (%)
84.3
Duplicates removed (%)
7.3
Number of peaks
14899 (qval < 1E-05)

Base call quality data from DBCLS SRA