SRX7025193
ATACseq of intestinal organoids

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Digestive tract
Cell type
Small intestinal organoids
NA
NA

Attributes by original data submitter

Sample

strain
C57Bl6N/129S4
isolate
47
Sample_number
2
age
8-12 weeks
dev_stage
adult
sex
female
tissue
Small intestinal organoids
genotype
Ptprk-Rspo3 fusion; KrasG12D; p53KO; Smad4KO
growth_media
EN
isolation_source
mouse intestine

Sequenced DNA Library

library_name
TEH50
library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
PCR

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
42868951
Reads aligned (%)
96.3
Duplicates removed (%)
5.8
Number of peaks
30553 (qval < 1E-05)

mm9

Number of total reads
42868951
Reads aligned (%)
96.3
Duplicates removed (%)
5.9
Number of peaks
30549 (qval < 1E-05)

Base call quality data from DBCLS SRA