SRX7024892
WT mESC Nono ChIP replicate2

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA

Attributes by original data submitter

Sample

strain
E14Tg2a
isolate
not collected
breed
not collected
cultivar
not collected
ecotype
not collected
age
not collected
dev_stage
not collected
sex
not determined
tissue
blastocyst
biomaterial_provider
Laboratory of Epigenetics, Institutes of Biomedical Sciences, Fudan University
sample number
41
cell_line
E14Tg2a
cell_type
not collected
collected_by
not collected
collection_date
not collected
culture_collection
not collected
treatment
standard mESC culture

Sequenced DNA Library

library_name
set2_mESC_WT_Nono_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2500

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
21048025
Reads aligned (%)
89.5
Duplicates removed (%)
43.6
Number of peaks
568 (qval < 1E-05)

mm9

Number of total reads
21048025
Reads aligned (%)
89.4
Duplicates removed (%)
43.8
Number of peaks
521 (qval < 1E-05)

Base call quality data from DBCLS SRA