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Install and launch IGV before selecting data to visualize
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For mm10
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For mm9
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For mm10
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For mm9
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: NA
wikigenes
PDBj
CellType: ES cells
ATCC
MeSH
RIKEN BRC
SRX7024886
NonoKO mESC Tet1 ChIP replicate2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
No description
Antigen
NA
Cell type
Cell type Class
Pluripotent stem cell
Cell type
ES cells
NA
NA
Attributes by original data submitter
Sample
strain
E14Tg2a
isolate
not collected
breed
not collected
cultivar
not collected
ecotype
not collected
age
not collected
dev_stage
not collected
sex
not determined
tissue
blastocyst
biomaterial_provider
Laboratory of Epigenetics, Institutes of Biomedical Sciences, Fudan University
sample number
40
cell_line
E14Tg2a
cell_type
not collected
collected_by
not collected
collection_date
not collected
culture_collection
not collected
treatment
standard mESC culture
Sequenced DNA Library
library_name
set2_mESC_NonoKO_Tet1_ChIP
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina HiSeq 2500
Where can I get the processing logs?
Read processing pipeline
log
mm10
Number of total reads
30094368
Reads aligned (%)
92.5
Duplicates removed (%)
28.2
Number of peaks
12100 (qval < 1E-05)
mm9
Number of total reads
30094368
Reads aligned (%)
92.4
Duplicates removed (%)
28.2
Number of peaks
11754 (qval < 1E-05)
Base call quality data from
DBCLS SRA