SRX7023039
GSM4130913: ATAC-Seq SU-DHL-2-1; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Blood
Cell type
Large cell lymphoma
NA
NA

Attributes by original data submitter

Sample

source_name
Lymph node; metastatic to peritoneal effusion
disease
large cell lymphoma; histiocytic
germ layer
Mesoderm

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was carried out as previously described (Buenrostro 2013) and sequenced on an Illumina HiSeq 4000 with 2x100 paired end sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
39988930
Reads aligned (%)
67.3
Duplicates removed (%)
34.6
Number of peaks
3395 (qval < 1E-05)

hg19

Number of total reads
39988930
Reads aligned (%)
67.0
Duplicates removed (%)
34.8
Number of peaks
3249 (qval < 1E-05)

Base call quality data from DBCLS SRA