Antigen

Antigen Class

ATAC-Seq

Antigen

ATAC-Seq

Cell type

Cell type Class

Lung

Cell type

Non-small cell lung cancer

NA

NA

Sample

source_name

lung; metastatic site to pleural effusion

disease

adenocarcinoma; non-small cell lung cancer

germ layer

Endoderm

Sequenced DNA Library

library_strategy

ATAC-seq

library_source

GENOMIC

library_selection

other

library_construction_protocol

ATAC-seq was carried out as previously described (Buenrostro 2013) and sequenced on an Illumina HiSeq 4000 with 2x100 paired end sequencing.

Sequencing Platform

instrument_model

Illumina HiSeq 4000

hg38

Number of total reads

41104836

Reads aligned (%)

71.3

Duplicates removed (%)

67.3

Number of peaks

2310 (qval < 1E-05)

hg19

Number of total reads

41104836

Reads aligned (%)

71.2

Duplicates removed (%)

67.3

Number of peaks

2309 (qval < 1E-05)