SRX7023035
GSM4130909: ATAC-Seq H1437-1; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Lung
Cell type
Non-small cell lung cancer
NA
NA

Attributes by original data submitter

Sample

source_name
lung; metastatic site to pleural effusion
disease
adenocarcinoma; non-small cell lung cancer
germ layer
Endoderm

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was carried out as previously described (Buenrostro 2013) and sequenced on an Illumina HiSeq 4000 with 2x100 paired end sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
67648754
Reads aligned (%)
61.9
Duplicates removed (%)
69.5
Number of peaks
7130 (qval < 1E-05)

hg19

Number of total reads
67648754
Reads aligned (%)
61.8
Duplicates removed (%)
69.5
Number of peaks
7105 (qval < 1E-05)

Base call quality data from DBCLS SRA