SRX7023032
GSM4130906: ATAC-Seq MSIPS-2; Homo sapiens; ATAC-seq

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
ATAC-Seq
Antigen
ATAC-Seq

Cell type

Cell type Class
Pluripotent stem cell
Cell type
iPS cells
NA
NA

Attributes by original data submitter

Sample

source_name
iPS Line
disease
normal
germ layer
Primitive

Sequenced DNA Library

library_strategy
ATAC-seq
library_source
GENOMIC
library_selection
other
library_construction_protocol
ATAC-seq was carried out as previously described (Buenrostro 2013) and sequenced on an Illumina HiSeq 4000 with 2x100 paired end sequencing.

Sequencing Platform

instrument_model
Illumina HiSeq 4000

Where can I get the processing logs?

Read processing pipeline log

hg38

Number of total reads
10811771
Reads aligned (%)
62.8
Duplicates removed (%)
30.8
Number of peaks
7972 (qval < 1E-05)

hg19

Number of total reads
10811771
Reads aligned (%)
62.7
Duplicates removed (%)
30.9
Number of peaks
7903 (qval < 1E-05)

Base call quality data from DBCLS SRA