Toggle navigation
ChIP-Atlas
Peak Browser
Target Genes
Colocalization
Enrichment Analysis
Publications
Docs
Advanced
Go
Find By ID
Visualize
Install and launch IGV before selecting data to visualize
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Error connecting to IGV?
Analyze
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
Download
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: OTX2
wikigenes
PDBj
CellType: hESC derived mesendodermal cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX702047
GSM1505706: OTX2 MNChIP-seq in cell type dMS Otx2 022113 mesendo; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
OTX2
Cell type
Cell type Class
Pluripotent stem cell
Cell type
hESC derived mesendodermal cells
NA
NA
Attributes by original data submitter
Sample
source_name
dMS
cell line
HUES64
cell type
dMS
chip antibody
OTX2(Abcam,ab21990,GR9703-1)
Sequenced DNA Library
library_name
ERROR: cannot retrieve data from NCBI: too many requests
library_strategy
ERROR: cannot retrieve data from NCBI: too many requests
library_source
ERROR: cannot retrieve data from NCBI: too many requests
library_selection
ERROR: cannot retrieve data from NCBI: too many requests
library_construction_protocol
ERROR: cannot retrieve data from NCBI: too many requests
Sequencing Platform
instrument_model
ERROR: cannot retrieve data from NCBI: too many requests
cycle_sequence
ERROR: cannot retrieve data from NCBI: too many requests
cycle_count
ERROR: cannot retrieve data from NCBI: too many requests
flow_sequence
ERROR: cannot retrieve data from NCBI: too many requests
flow_count
ERROR: cannot retrieve data from NCBI: too many requests
key_sequence
ERROR: cannot retrieve data from NCBI: too many requests
Where can I get the processing logs?
Read processing pipeline
log
hg19
Number of total reads
24446043
Reads aligned (%)
88.5
Duplicates removed (%)
6.0
Number of peaks
7601 (qval < 1E-05)
hg38
Number of total reads
24446043
Reads aligned (%)
90.0
Duplicates removed (%)
5.0
Number of peaks
7651 (qval < 1E-05)
Base call quality data from
DBCLS SRA