SRX698340
K36me3 ChIP DNA sample from ChIP sequencing of secondary DOX-inducible MEFs

Sample information curated by ChIP-Atlas

Antigen

Antigen Class
No description
Antigen
NA

Cell type

Cell type Class
Embryonic fibroblast
Cell type
MEF
Tissue
Embryonic Fibroblast
Lineage
primaryCells
Description
Mouse Embryonic Fibroblast

Attributes by original data submitter

Sample

strain
CD1 X 129/S2 X C57/B6 (Mixed background)
age
not applicable
biomaterial_provider
Dr. Andras Nagy, 25 Orde St. 5-1015-3, Toronto, ON Canada M5T-3H7
sex
not determined
tissue
cultured cells
cell_line
1B
cell_type
Doxycycline inducible secondary MEFs
Cell_origin
E13.5 tetraploid chimeric embryo
timecourse day of collection
Day0
Doxycycline concentration
0 ng/ml

Sequenced DNA Library

library_name
2oMEF_ChIP_K36me3
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP

Sequencing Platform

instrument_model
Illumina HiSeq 2000

Where can I get the processing logs?

Read processing pipeline log

mm10

Number of total reads
34260909
Reads aligned (%)
93.4
Duplicates removed (%)
6.8
Number of peaks
251 (qval < 1E-05)

mm9

Number of total reads
34260909
Reads aligned (%)
93.2
Duplicates removed (%)
6.8
Number of peaks
223 (qval < 1E-05)

Base call quality data from DBCLS SRA